3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05857

Details:

PFam ID : PF05857

PFam Domain Description : TraX protein

Number of Sequence in 50% Dataset : 161

Number of Sequence in Full Dataset : 355

Average sequence length: 212.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05857	Q5CUE1_CRYPV_13_219	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05857	E8KVD0_STRVE_1_123	99.7

Sequence based PCA Plot of the family - PF05857 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=62 Length=8
Motif2 Start=89 Length=8
Motif3 Start=3 Length=14
Motif4 Start=253 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay