3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05849

Details:

PFam ID : PF05849

PFam Domain Description : Fibroin light chain (L-fibroin)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 12

Average sequence length: 197.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05849	A5A6G8_9NEOP_19_218	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05849	D7PBW7_9NEOP_20_262	100

Sequence based PCA Plot of the family - PF05849 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay