3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05848

Details:

PFam ID : PF05848

PFam Domain Description : Firmicute transcriptional repressor of class III stress genes (CtsR)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 179

Average sequence length: 147.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05848	E3ZVK7_LISSE_1_53	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05848	E3CVG1_9BACT_1_158	100

Sequence based PCA Plot of the family - PF05848 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=22 Length=8
Motif2 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay