3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05846

Details:

PFam ID : PF05846

PFam Domain Description : Chordopoxvirus A15 protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 12

Average sequence length: 83.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05846	Q6TV96_9POXV_1_88	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05846	Q9Q8J5_9POXV_1_90	100

Sequence based PCA Plot of the family - PF05846 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay