3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05845

Details:

PFam ID : PF05845

PFam Domain Description : Bacterial phosphonate metabolism protein (PhnH)

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 177

Average sequence length: 183.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05845	A0ZMH0_NODSP_1_32	93.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05845	D6TK50_9CHLR_2_223	100

Sequence based PCA Plot of the family - PF05845 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=100 Length=8
Motif2 Start=191 Length=8
Motif3 Start=175 Length=8
Motif4 Start=141 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay