3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05840

Details:

PFam ID : PF05840

PFam Domain Description : Bacteriophage replication gene A protein (GPA)

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 181

Average sequence length: 309.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05840	Q2BRM4_9GAMM_134_429	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05840	Q1Z4Y7_PHOPR_85_437	98.8

Sequence based PCA Plot of the family - PF05840 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=194 Length=8
Motif2 Start=239 Length=8
Motif3 Start=222 Length=11
Motif4 Start=137 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay