3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05838

Details:

PFam ID : PF05838

PFam Domain Description : Glycosyl hydrolase 108

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 235

Average sequence length: 86.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05838	D1K891_9BACE_1_43	79.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05838	B6WTJ2_9DELT_8_127	100

Sequence based PCA Plot of the family - PF05838 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=10 Length=8
Motif3 Start=74 Length=8
Motif4 Start=97 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay