3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05836

Details:

PFam ID : PF05836

PFam Domain Description : Chorion protein S16

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 12

Average sequence length: 92.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05836	B5DQE4_DROPS_33_92	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05836	O62607_CERCA_47_151	100

Sequence based PCA Plot of the family - PF05836 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay