3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05834

Details:

PFam ID : PF05834

PFam Domain Description : Lycopene cyclase protein

Number of Sequence in 50% Dataset : 139

Number of Sequence in Full Dataset : 391

Average sequence length: 313.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05834	A4GIH4_9BACT_11_110	76.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05834	B9HDX2_POPTR_1_199	100

Sequence based PCA Plot of the family - PF05834 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=12 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay