3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05833

Details:

PFam ID : PF05833

PFam Domain Description : Fibronectin-binding protein A N-terminus (FbpA)

Number of Sequence in 50% Dataset : 391

Number of Sequence in Full Dataset : 949

Average sequence length: 344.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05833	C6NRP3_9GAMM_70_187	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05833	C6NRP3_9GAMM_70_187	99.5

Sequence based PCA Plot of the family - PF05833 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=69 Length=8
Motif3 Start=20 Length=8
Motif4 Start=144 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay