3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05825

Details:

PFam ID : PF05825

PFam Domain Description : Beta-microseminoprotein (PSP-94)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 35

Average sequence length: 80.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05825	D9N570_GLOBL_29_102	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05825	E1BXW5_CHICK_21_115	100

Sequence based PCA Plot of the family - PF05825 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=21
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay