3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05823

Details:

PFam ID : PF05823

PFam Domain Description : Nematode fatty acid retinoid binding protein (Gp-FAR-1)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 42

Average sequence length: 143.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05823	F1LDI2_ASCSU_28_185	23.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05823	Q19478_CAEEL_31_184	100

Sequence based PCA Plot of the family - PF05823 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay