3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05821

Details:

PFam ID : PF05821

PFam Domain Description : NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 110

Average sequence length: 137.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05821	E5A1N7_LEPMC_39_127	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05821	E3M416_CAERE_8_196	100

Sequence based PCA Plot of the family - PF05821 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=153 Length=8
Motif2 Start=51 Length=8
Motif3 Start=137 Length=8
Motif4 Start=71 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay