3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05820

Details:

PFam ID : PF05820

PFam Domain Description : Baculovirus protein of unknown function (DUF845)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 40

Average sequence length: 116.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05820	Q6JPC3_NPVNL_2_119	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05820	Q6JPC3_NPVNL_2_119	100

Sequence based PCA Plot of the family - PF05820 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=110 Length=8
Motif4 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay