3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05818

Details:

PFam ID : PF05818

PFam Domain Description : Enterobacterial TraT complement resistance protein

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 67

Average sequence length: 195.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05818	D5CKN3_ENTCC_32_143	37.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05818	Q4HSL8_CAMUP_23_255	100

Sequence based PCA Plot of the family - PF05818 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=188 Length=8
Motif2 Start=3 Length=8
Motif3 Start=52 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay