3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05817

Details:

PFam ID : PF05817

PFam Domain Description : Oligosaccharyltransferase subunit Ribophorin II

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 151

Average sequence length: 334.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05817	C4Q8H5_SCHMA_180_863	81.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05817	B9EVI1_ORYSJ_1_240	100

Sequence based PCA Plot of the family - PF05817 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=517 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay