3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05816

Details:

PFam ID : PF05816

PFam Domain Description : Toxic anion resistance protein (TelA)

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 305

Average sequence length: 319.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05816	D6TT84_9CHLR_64_414	53.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05816	Q8L292_PROVU_31_368	100

Sequence based PCA Plot of the family - PF05816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=93 Length=8
Motif4 Start=165 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay