3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05815

Details:

PFam ID : PF05815

PFam Domain Description : Baculovirus protein of unknown function (DUF844)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 38

Average sequence length: 343.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05815	B6S2L0_9ABAC_1_361	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05815	B6S2L0_9ABAC_1_361	100

Sequence based PCA Plot of the family - PF05815 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=320 Length=11
Motif2 Start=300 Length=11
Motif3 Start=160 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay