3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05810

Details:

PFam ID : PF05810

PFam Domain Description : NinF protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 20

Average sequence length: 46.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05810	E9WVR7_ECOLX_1_54	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05810	Q8X689_ECO57_1_24	100

Sequence based PCA Plot of the family - PF05810 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay