3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05806

Details:

PFam ID : PF05806

PFam Domain Description : Noggin

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 59

Average sequence length: 198.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05806	C4QKC7_SCHMA_130_241	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05806	Q2NNA7_TAKRU_38_269	100

Sequence based PCA Plot of the family - PF05806 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=24 Length=11
Motif3 Start=144 Length=8
Motif4 Start=126 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay