3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05805

Details:

PFam ID : PF05805

PFam Domain Description : L6 membrane protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 63

Average sequence length: 180.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05805	C9J6Q4_HUMAN_1_159	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05805	F1P3K0_CHICK_10_213	100

Sequence based PCA Plot of the family - PF05805 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=6 Length=11
Motif2 Start=96 Length=8
Motif3 Start=213 Length=8
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay