3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05802

Details:

PFam ID : PF05802

PFam Domain Description : Enterobacterial EspB protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 26

Average sequence length: 174.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05802	D2RV53_HALTV_46_187	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05802	Q8GC68_ECOLX_1_196	96

Sequence based PCA Plot of the family - PF05802 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay