3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05794

Details:

PFam ID : PF05794

PFam Domain Description : T-complex protein 11

Number of Sequence in 50% Dataset : 104

Number of Sequence in Full Dataset : 222

Average sequence length: 367.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05794	E1ZU59_9CHLO_279_460	90.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05794	C5KBT4_9ALVE_236_772	100

Sequence based PCA Plot of the family - PF05794 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay