3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05793

Details:

PFam ID : PF05793

PFam Domain Description : Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 133

Average sequence length: 294.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05793	Q4S5H9_TETNG_1_119	67.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05793	C1MUM7_MICPC_151_557	99.2

Sequence based PCA Plot of the family - PF05793 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=156 Length=8
Motif4 Start=141 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay