3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05789

Details:

PFam ID : PF05789

PFam Domain Description : Baculovirus VP1054 protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 40

Average sequence length: 324.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05789	A1YRA2_9ABAC_9_356	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05789	A1YRA2_9ABAC_9_356	100

Sequence based PCA Plot of the family - PF05789 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=243 Length=8
Motif2 Start=292 Length=8
Motif3 Start=23 Length=11
Motif4 Start=268 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay