3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05788

Details:

PFam ID : PF05788

PFam Domain Description : Orbivirus RNA-dependent RNA polymerase (VP1)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 20

Average sequence length: 927.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05788	C4MLH6_9REOV_5_1299	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05788	C4MLH6_9REOV_5_1299	100

Sequence based PCA Plot of the family - PF05788 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=240 Length=8
Motif2 Start=958 Length=8
Motif3 Start=372 Length=8
Motif4 Start=99 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay