3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05787

Details:

PFam ID : PF05787

PFam Domain Description : Bacterial protein of unknown function (DUF839)

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 706

Average sequence length: 368.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05787	A3FQ50_CRYPV_9_128	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05787	A1ZFM9_9BACT_443_535	99.2

Sequence based PCA Plot of the family - PF05787 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=39 Length=8
Motif3 Start=51 Length=8
Motif4 Start=224 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay