3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05786

Details:

PFam ID : PF05786

PFam Domain Description : Condensin complex subunit 2

Number of Sequence in 50% Dataset : 134

Number of Sequence in Full Dataset : 255

Average sequence length: 456.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05786	A3FQ50_CRYPV_9_128	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05786	E2ALK2_9HYME_254_686	99.6

Sequence based PCA Plot of the family - PF05786 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=131 Length=8
Motif4 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay