3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05784

Details:

PFam ID : PF05784

PFam Domain Description : Betaherpesvirus UL82/83 protein N terminus

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 24

Average sequence length: 329.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05784	Q9JE48_9BETA_6_350	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05784	Q91TL4_TUHV1_30_399	100

Sequence based PCA Plot of the family - PF05784 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=329 Length=8
Motif4 Start=290 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay