3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05783

Details:

PFam ID : PF05783

PFam Domain Description : Dynein light intermediate chain (DLIC)

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 191

Average sequence length: 265.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05783	B9QDF5_TOXGO_145_493	64.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05783	Q5C4J8_SCHJA_1_103	99.4

Sequence based PCA Plot of the family - PF05783 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=239 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay