3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05782 Details: PFam ID : PF05782 PFam Domain Description : Extracellular matrix protein 1 (ECM1) Number of Sequence in 50% Dataset : 17 Number of Sequence in Full Dataset : 20 Average sequence length: 189.6 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF05782C0HA37_SALSA_274_51181.2 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF05782C0HA37_SALSA_274_511100 Sequence based PCA Plot of the family - PF05782 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=1 Length=8Motif2 Start=37 Length=8Motif3 Start=60 Length=8Motif4 Start=86 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF05782
PFam Domain Description : Extracellular matrix protein 1 (ECM1)
Number of Sequence in 50% Dataset : 17
Number of Sequence in Full Dataset : 20
Average sequence length: 189.6
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER