3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05781

Details:

PFam ID : PF05781

PFam Domain Description : MRVI1 protein

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 39

Average sequence length: 303.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05781	F1R1K3_DANRE_147_217	23.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05781	E1BU96_CHICK_3_402	94.7

Sequence based PCA Plot of the family - PF05781 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay