3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05775

Details:

PFam ID : PF05775

PFam Domain Description : Enterobacteria AfaD invasin protein

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 18

Average sequence length: 99.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05775	B2Q5R1_PROST_30_135	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05775	E0LZA3_9ENTR_38_148	100

Sequence based PCA Plot of the family - PF05775 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay