3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05766

Details:

PFam ID : PF05766

PFam Domain Description : Bacteriophage Lambda NinG protein

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 103

Average sequence length: 149.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05766	F2FCD6_SALDU_2_75	91.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05766	E7SUZ1_SHIBO_1_101	99.0

Sequence based PCA Plot of the family - PF05766 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=21 Length=17
Motif2 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay