3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05764

Details:

PFam ID : PF05764

PFam Domain Description : YL1 nuclear protein

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 160

Average sequence length: 203.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05764	A7S7D7_NEMVE_1_55	62.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05764	Q6CEG3_YARLI_8_289	100

Sequence based PCA Plot of the family - PF05764 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=4 Length=17
Motif3 Start=218 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay