3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05762

Details:

PFam ID : PF05762

PFam Domain Description : VWA domain containing CoxE-like protein

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 668

Average sequence length: 185.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05762	F0ZII1_DICPU_10_445	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05762	Q2LXL9_SYNAS_260_498	100

Sequence based PCA Plot of the family - PF05762 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=125 Length=8
Motif2 Start=178 Length=8
Motif3 Start=150 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay