3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05761

Details:

PFam ID : PF05761

PFam Domain Description : 5' nucleotidase family

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 216

Average sequence length: 350.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05761	F0ZII1_DICPU_10_445	80.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05761	A9F2C9_SORC5_127_618	100

Sequence based PCA Plot of the family - PF05761 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=138 Length=8
Motif2 Start=46 Length=8
Motif3 Start=178 Length=11
Motif4 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay