3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05760

Details:

PFam ID : PF05760

PFam Domain Description : Immediate early response protein (IER)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 59

Average sequence length: 161.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05760	D6WLU4_TRICA_1_187	76

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05760	F1SD81_PIG_97_221	100

Sequence based PCA Plot of the family - PF05760 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay