3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05758

Details:

PFam ID : PF05758

PFam Domain Description : Ycf1

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 217

Average sequence length: 507.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05758	YCF1_JASNU_21_991	70.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05758	D7SS29_VITVI_1_121	99.5

Sequence based PCA Plot of the family - PF05758 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=153 Length=8
Motif2 Start=6 Length=8
Motif3 Start=172 Length=8
Motif4 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay