3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05757

Details:

PFam ID : PF05757

PFam Domain Description : Oxygen evolving enhancer protein 3 (PsbQ)

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 100

Average sequence length: 160.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05757	B9I7F3_POPTR_20_218	45.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05757	Q76B86_CYACA_15_217	98.9

Sequence based PCA Plot of the family - PF05757 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay