3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05754

Details:

PFam ID : PF05754

PFam Domain Description : Domain of unknown function (DUF834)

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 381

Average sequence length: 64.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05754	A2DG10_TRIVA_12_183	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05754	B8B141_ORYSI_102_152	100

Sequence based PCA Plot of the family - PF05754 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay