3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05753

Details:

PFam ID : PF05753

PFam Domain Description : Translocon-associated protein beta (TRAPB)

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 107

Average sequence length: 165.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05753	A2DG10_TRIVA_12_183	39.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05753	D8TRM3_VOLCA_11_214	99.0

Sequence based PCA Plot of the family - PF05753 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay