3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05751

Details:

PFam ID : PF05751

PFam Domain Description : Cytochrome C oxidase, mono-heme subunit/FixO

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 360

Average sequence length: 137.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05751	B3R1F3_CUPTR_10_54	52.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05751	D9SJ35_GALCS_5_178	100

Sequence based PCA Plot of the family - PF05751 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=13 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay