3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05746

Details:

PFam ID : PF05746

PFam Domain Description : DALR anticodon binding domain

Number of Sequence in 50% Dataset : 299

Number of Sequence in Full Dataset : 2219

Average sequence length: 116.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05746	F0T378_CHLP6_1_83	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05746	E4X8N4_OIKDI_211_333	99.7

Sequence based PCA Plot of the family - PF05746 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=61 Length=14
Motif3 Start=14 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay