3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05743

Details:

PFam ID : PF05743

PFam Domain Description : UEV domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 171

Average sequence length: 114.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05743	D7LC94_ARALL_71_135	96.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05743	A3GFP8_PICST_25_189	100

Sequence based PCA Plot of the family - PF05743 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=54 Length=8
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay