3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05742

Details:

PFam ID : PF05742

PFam Domain Description : NRDE protein

Number of Sequence in 50% Dataset : 171

Number of Sequence in Full Dataset : 441

Average sequence length: 224.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05742	E3KTY1_PUCGT_94_148	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05742	E1Z4E3_9CHLO_97_205	100

Sequence based PCA Plot of the family - PF05742 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=43 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay