3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05738

Details:

PFam ID : PF05738

PFam Domain Description : Cna protein B-type domain

Number of Sequence in 50% Dataset : 776

Number of Sequence in Full Dataset : 3419

Average sequence length: 73.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05738	E2S3S9_9CORY_114_158	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05738	E4NZA8_BIFBP_1033_1105	97.6

Sequence based PCA Plot of the family - PF05738 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay