3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05737

Details:

PFam ID : PF05737

PFam Domain Description : Collagen binding domain

Number of Sequence in 50% Dataset : 162

Number of Sequence in Full Dataset : 330

Average sequence length: 132.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05737	D7VEE3_LACPL_5_76	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05737	D4RCN6_ENTFC_172_223	99.6

Sequence based PCA Plot of the family - PF05737 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=99 Length=8
Motif3 Start=1 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay