3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05735

Details:

PFam ID : PF05735

PFam Domain Description : Thrombospondin C-terminal region

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 64

Average sequence length: 174.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05735	B0XAV6_CULQU_1104_1170	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05735	A7S9R9_NEMVE_520_720	100

Sequence based PCA Plot of the family - PF05735 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=1 Length=8
Motif3 Start=17 Length=8
Motif4 Start=174 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay