3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05731

Details:

PFam ID : PF05731

PFam Domain Description : TROVE domain

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 251

Average sequence length: 223.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05731	E9AIS2_LEIBR_255_626	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05731	TE80_TETTH_24_508	100

Sequence based PCA Plot of the family - PF05731 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=162 Length=11
Motif4 Start=301 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay